Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007335: Prochlorococcus marinus str. NATL2A, complete genome

NCBI: NC_007335

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: This strain was collected at a depth of 30 meters in the north Atlantic Ocean. Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111757214033522764Island text2.2531215.582414.3257Neighbours21BLASTN117572.gbk
2331072*35409923028Island text2.2072617.00819.62967Neighbours21BLASTN331072.gbk
367284769663023784Island text1.568229.601432.8126Neighbours21BLASTN672847.gbk
4944175*97349129317Island text1.7910419.382932.946Neighbours21BLASTN944175.gbk
51053876*107498221107Island text1.666218.057926.2054Neighbours21BLASTN1053876.gbk
61159000117708118082Island text1.5758318.470326.3248Neighbours21BLASTN+1159000.gbk
71474455149442419970Island text1.5050420.026830.6737Neighbours21BLASTN1474455.gbk
81820332184276822437Island text1.7551917.813718.9883Neighbours21BLASTN1820332.gbk