Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007292: Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome

NCBI: NC_007292

Host Lineage: Blochmannia pennsylvanicus; Blochmannia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Endosymbiont of ants. This endosymbiont lives in ants of the genus Camponotus. This microbe lives within host cells (bacteriocytes and ant ovaries) and is passed to offspring via vertical transmission. Primary endosymbiont of carpenter ant, Camponotus pennsylvanicus. USA: Falmouth, Massachusetts.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2081720817Island text1.6331214.913719.5791NeighboursBLASTN1.gbk
211339613533421939Island text1.6302515.743923.1347NeighboursBLASTN113396.gbk
358691761009923183Island text2.3593814.199430.8849NeighboursBLASTN586917.gbk
4623765*65772633962Island text1.7792414.22928.1822NeighboursBLASTN+623765.gbk