Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007274: Pseudomonas syringae pv. phaseolicola 1448A large plasmid, complete

NCBI: NC_007274

Host Lineage: Pseudomonas savastanoi; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Strain 1448A is a natural occurring rifampicin-resistant mutant strain. This is gram-negative bacterium pathogenic in plants. Characterized as causing halo blight on beans (Phaseolus vulgaris). This bacterium is closely related to Pseudomonas syringae pv. glycinea and Pseudomonas syringae pv. savastanoi and produces phaseolotoxin, which is a phytotoxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1729799468121703Island text1.557328.948827.6993Neighbours11BLASTN+72979.gbk