Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007205: Candidatus Pelagibacter ubique HTCC1062, complete genome

NCBI: NC_007205

Host Lineage: Pelagibacter ubique; Pelagibacter; Pelagibacteraceae; Rickettsiales; Proteobacteria; Bacteria

General Information: They were originally named SAR11 and known only from their rRNA genes, which were first identified in environmental samples from the Sargasso Sea in 1990. P. ubique are possibly the most numerous bacteria in the world.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*1956919569Island text1.3714416.287727.6404Neighbours21BLASTN1.gbk
26006910034440276Island text1.7909915.465629.7563Neighbours21BLASTN+60069.gbk
322153924436122823Island text1.7214915.369629.5834Neighbours21BLASTN+221539.gbk
4424500*44975125252Island text1.715615.564229.3154Neighbours21BLASTN424500.gbk
5499808*52461024803Island text1.8040818.105529.3215Neighbours21BLASTN499808.gbk
6841818*86460622789Island text1.431316.938228.7855Neighbours21BLASTN841818.gbk
788791291770729796Island text1.4970620.969121.9089Neighbours21887912.gbk
81059684*108783428151Island text2.0443317.26629.1643Neighbours21BLASTN1059684.gbk
91232734*126104828315Island text1.7284521.173132.7339Neighbours21BLASTN+1232734.gbk