Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007181: Sulfolobus acidocaldarius DSM 639, complete genome

NCBI: NC_007181

Host Lineage: Sulfolobus acidocaldarius; Sulfolobus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Sulfolobus acidocaldarius DSM 639 was isolated from and acidic hot spring in Yellowstone National Park. Extreme thermoacidophilic sulfur-oxidizing archaeon. This organsim is an extreme thermoacidophilic, sulfur-oxidizing archaeon commonly found in hot springs growing at very high temperatures. This obligate aerobe is immotile and grows at a temperature of 55-85 degrees C with optimal growth at 70-75 degrees C. The pH for growth is 1-6 with an optimum pH 2-3.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155685*7579920115Island text1.7063721.580136.4113Neighbours21BLASTN55685.gbk
2141299*16027518977Island text1.8531322.130438.8131Neighbours21BLASTN141299.gbk
316364018609922460Island text2.0199921.358239.5602Neighbours21BLASTN163640.gbk
4333891*35310819218Island text2.4418922.18241.2596Neighbours21BLASTN+333891.gbk
5459626*50174942124Island text3.0368724.718240.0879Neighbours21BLASTNIslandViewer 459626.gbk
6543000*56070717708Island text2.89322.124338.5918Neighbours21BLASTN543000.gbk
791500093749122492Island text1.6410224.885925.772Neighbours21BLASTN915000.gbk
81094422*112292028499Island text2.7100335.926642.293Neighbours21BLASTN+1094422.gbk
91238806*126024921444Island text3.5844723.928640.8721Neighbours21BLASTN1238806.gbk
101295956*133831342358Island text1.8318123.174430.7597Neighbours21BLASTN+IslandViewer 1295956.gbk
111364522*138602521504Island text1.9316623.172436.4332Neighbours21BLASTN1364522.gbk
121636425*167209935675Island text1.6300421.702427.9606Neighbours211636425.gbk
131740000176182921830Island text1.7061431.039924.0515Neighbours323BLASTN+IslandViewer 1740000.gbk
141766910179406427155Island text1.8461228.837327.7839Neighbours21BLASTN+1766910.gbk
151818500183778819289Island text1.4816626.924228.1886Neighbours323BLASTN+IslandViewer 1818500.gbk
161856455187853122077Island text1.8638424.339330.6493Neighbours21BLASTN+1856455.gbk
171963887198780323917Island text1.557223.145734.651Neighbours21BLASTN1963887.gbk
182054663207950924847Island text1.6550520.184829.8392Neighbours21BLASTN2054663.gbk