Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_007168: Staphylococcus haemolyticus JCSC1435, complete genome

NCBI: NC_007168

Host Lineage: Staphylococcus haemolyticus; Staphylococcus; Staphylococcaceae; Bacillales; Firmicutes; Bacteria

General Information: Staphylococcus haemolyticus JCSC1435 was isolated from a Japanese inpatient at Juntendo Hospital, Tokyo, in 2000. This strain is a highly resistant strain which has been shown to generate spontaneous antibiotic sensitive mutants. Causes opportunistic infections in humans. Staphylcocci are generally found inhabiting the skin and mucous membranes of mammals and birds. Some members of this genus can be found as human commensals and these are generally believed to have the greatest pathogenic potential in opportunistic infections. Staphylococcus haemolyticus was originally isolated from human skin and traditionally considered to be a nonpathogenic commensal. Recently this organism has been recognized as a pathogen in animals and humans. It is known to be involved in opportunistic infections associated with the implantation of foreign bodies, paticularly in those with compromised immune systems. Resistance to multiple antibiotics has been observed in clinical isolates and it is possible S. haemolyticus could serve a donor or resistance genes to other more virulent staphlococci.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116431*3433517905Island text1.5919118.430822.9504Neighbours21BLASTN+16431.gbk
219563821417518538Island text1.6419718.464324.7107Neighbours21BLASTN+195638.gbk
345400047628822289Island text1.3630419.060125.3685Neighbours21BLASTN+454000.gbk
466528468618220899Island text1.7648418.991233.9384Neighbours21BLASTN665284.gbk
5813957*83855024594Island text1.69821.503333.6755Neighbours21BLASTN+IslandViewer 813957.gbk
61167454*119908831635Island text2.2499524.798142.1569Neighbours21BLASTN1167454.gbk
71494725151645421730Island text1.5959325.463143.4153BLASTN1494725.gbk
81705763*172469118929Island text1.8677919.120934.4906Neighbours21BLASTN1705763.gbk
91839382185725517874Island text2.020417.515837.3553Neighbours21BLASTN+1839382.gbk
101923723194369919977Island text1.6439118.697727.9891Neighbours21BLASTN+1923723.gbk
112349894237983629943Island text1.7701217.596430.1194Neighbours21BLASTN+2349894.gbk
122415361243618320823Island text1.5337420.903836.4265Neighbours21BLASTN+2415361.gbk
132448422*246932920908Island text1.4651122.841728.2464Neighbours21BLASTNIslandViewer 2448422.gbk
142631535*265430622772Island text1.6530517.114527.2993Neighbours21BLASTN+2631535.gbk