Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007164: Corynebacterium jeikeium K411, complete genome

NCBI: NC_007164

Host Lineage: Corynebacterium jeikeium; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from the axilla of a bone marrow transplant patient. A serious nocosomial pathogen. This bacterium is a lipophilic and multidrug resistant member of the human skin flora. This species has been associated with bacterial endocarditis following cardiac surgery. Other nocosomial infections involving this organism are associated with immunocompromised patients with malignancies, in-place medical devices, breaks in the skin barrier, and therapy with broad-spectrum antibiotics.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1628168338620571Island text1.8949124.445245.6877Neighbours11BLASTN+IslandViewer 62816.gbk
2380000*40056720568Island text1.866525.252330.4142Neighbours11BLASTN+IslandViewer 380000.gbk
3453743*47209918357Island text1.5938822.86635.4854Neighbours11BLASTN+453743.gbk
4511171*53769026520Island text2.2008129.615335.3929Neighbours11BLASTN+IslandViewer 511171.gbk
554765457047722824Island text1.6583322.33439.9866Neighbours11BLASTN+547654.gbk
6622000*65646734468Island text2.0023228.462337.357Neighbours11BLASTN+IslandViewer 622000.gbk
777500079726122262Island text1.7392726.098639.2265Neighbours11BLASTN+IslandViewer 775000.gbk
882200084597523976Island text2.0103424.823728.2251Neighbours11BLASTN+IslandViewer 822000.gbk
91090858111859527738Island text2.3717728.810533.4612Neighbours11BLASTNIslandViewer 1090858.gbk
101434305147733743033Island text2.1669529.808136.6758Neighbours11BLASTN+IslandViewer 1434305.gbk
111495804*151859122788Island text1.53623.632139.3288Neighbours11BLASTN+1495804.gbk
121839154187426735114Island text2.571128.601633.5592Neighbours11BLASTN+IslandViewer 1839154.gbk
132046937*207953432598Island text1.4371825.060839.8039Neighbours11BLASTN+IslandViewer 2046937.gbk
142068678*209743828761Island text1.4892623.498332.2877Neighbours11BLASTN+IslandViewer 2068678.gbk
152261644*228587624233Island text1.3581223.729328.7672Neighbours11BLASTN+IslandViewer 2261644.gbk
162446879*247349926621Island text2.0590125.509323.1179Neighbours11BLASTN+2446879.gbk