Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_007109: Rickettsia felis URRWXCal2, complete genome

NCBI: NC_007109

Host Lineage: Rickettsia felis; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This organism was first isolated from cat fleas. It is an obligate intracellular pathogen and is transmitted transovarially in fleas. It is found associated with some human illnesses, and belongs to the spotted-fever group of Rickettsia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1300991*32313722147Island text1.9958514.276826.7659Neighbours21BLASTN+IslandViewer 300991.gbk
240150041909917600Island text1.4719813.229615.4769Neighbours21BLASTN+IslandViewer 401500.gbk
380833182664718317Island text1.695113.442424.7381Neighbours21BLASTN+808331.gbk
489400091609922100Island text2.8453511.341822.2378Neighbours21BLASTN894000.gbk
51025500*104404618547Island text2.6609712.794923.7605Neighbours21BLASTN+IslandViewer 1025500.gbk
61105251112857523325Island text1.3298115.369625.2284Neighbours21BLASTN+1105251.gbk
71206421*123611629696Island text1.6227413.995825.059Neighbours21BLASTN+1206421.gbk
81335037135749822462Island text1.5536514.720324.3726Neighbours21BLASTN1335037.gbk