Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006905: Salmonella enterica subsp. enterica serovar Choleraesuis str

NCBI: NC_006905

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132651735159925083Island text1.7168337.46538.7169Neighbours41BLASTN+IslandViewer PAI DB326517.gbk
2368942*39327424333Island text1.7444434.10939.0287Neighbours41BLASTN+IslandViewer 368942.gbk
340115443134930196Island text1.8574332.148830.6775Neighbours41BLASTN+IslandViewer PAI DB401154.gbk
465173267724625515Island text2.5908236.12617.6514Neighbours41BLASTN+IslandViewer PAI DB651732.gbk
5848000*86575317754Island text1.9287731.240920.3009Neighbours41BLASTN+IslandViewer 848000.gbk
694641897214125724Island text2.3481837.168218.0993Neighbours41BLASTN+IslandViewer 946418.gbk
71186895*121502828134Island text1.9695333.911924.2249Neighbours41BLASTN+1186895.gbk
81342474137811135638Island text2.6952239.191226.056Neighbours41BLASTN+IslandViewer PAI DB1342474.gbk
91509093153636427272Island text2.1308934.03231.7487Neighbours41BLASTNIslandViewer PAI DB1509093.gbk
101726416175294526530Island text2.5533338.212120.9796Neighbours41BLASTN+IslandViewer 1726416.gbk
111766000178860222603Island text1.6348330.392828.487Neighbours41BLASTN+IslandViewer 1766000.gbk
121961774*198409922326Island text1.8073632.483924.1298Neighbours41BLASTN+IslandViewer 1961774.gbk
132175361220410628746Island text2.8497141.39624.722Neighbours41BLASTNIslandViewer 2175361.gbk
142235607226436328757Island text3.1612443.495931.9814Neighbours41BLASTN+IslandViewer 2235607.gbk
152355290237961224323Island text1.6918937.609427.6066Neighbours51BLASTN