Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006834: Xanthomonas oryzae pv. oryzae KACC10331, complete genome

NCBI: NC_006834

Host Lineage: Xanthomonas oryzae; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This plant pathogen affects rice plants by causing leaf blight, a major problem in Asian countries where rice production occurs on an industrial scale. Causes disease in rice. These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. Xanthomonas oryzae contains two pathovars which cause enconomically significant diseases in rice. Xanthomonas oryzae pathovar oryzae causes bacterial leaf blight which is one of the most serious diseases of rice. This disease is common in temperate and tropical areas and can cause significant crop loss.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113950015810918610Island text1.5134119.757226.3085Neighbours11BLASTN+IslandViewer 139500.gbk
278750081555228053Island text2.2217524.417436.1974Neighbours11BLASTN+IslandViewer 787500.gbk
31414113144373429622Island text2.8434232.916123.3513Neighbours11BLASTN+IslandViewer 1414113.gbk
41602994163009927106Island text1.7768824.385623.2531Neighbours11BLASTN+IslandViewer 1602994.gbk
51849492186924719756Island text1.5216318.056915.9185Neighbours11BLASTN+1849492.gbk
62377335240574328409Island text1.6960623.1724.9561Neighbours11BLASTN+IslandViewer 2377335.gbk
73422985*344422221238Island text1.5117817.728620.2339Neighbours11BLASTN+IslandViewer 3422985.gbk