Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006833: Wolbachia endosymbiont strain TRS of Brugia malayi, complete

NCBI: NC_006833

Host Lineage: Wolbachia endosymbiont of Brugia malayi; Wolbachia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: A nematode endosymbiont. This group of bacteria are associated with a variety of invertebrate species, some as pathogens, some in a symbiotic relationship. Typically these organisms are transmitted maternally from mother to daughter transovarially (through the egg) although these bacteria can affect their hosts reproductive capabilities in order to enhance transmission. The net outcome is the increase of hosts carrying the bacteria in the next generation, thereby increasing transmission. This strain naturally infects Brugia malayi, a parasitic filarial nematode that causes lymphatic filariasis, one of the most devastating diseases in humans. The endosymbiont plays important roles in the biology of the nematide host. One of the known such effects are aberrant sex ratios in the host, parthenogenesis and feminization of genetic males, etc.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1409599*44663937041Island text2.117419.446341.5902Neighbours21BLASTN409599.gbk
2449132*47364524514Island text1.6556914.972927.1765Neighbours21BLASTN449132.gbk
3637964*65659918636Island text1.5535215.683826.8212Neighbours21BLASTN637964.gbk
4806467*82648920023Island text1.6466814.933927.1592Neighbours21BLASTN+806467.gbk
5838330*85659918270Island text1.704613.807130.3326Neighbours21BLASTN838330.gbk
6902744*92610523362Island text1.6403215.524332.1625Neighbours21BLASTN902744.gbk
797601099534019331Island text1.6610815.485223.8793Neighbours21BLASTN976010.gbk
81011537*105506743531Island text2.1701714.191826.3503Neighbours21BLASTN1011537.gbk