Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006832: Ehrlichia ruminantium str. Welgevonden, complete genome

NCBI: NC_006832

Host Lineage: Ehrlichia ruminantium; Ehrlichia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was obtained from an infected tick and maintained by serial infection in mice. Obligate intracellular bacterium and causative agent of heartwater. This organism causes heartwater, a disease with a high mortality rate that affects both wild and domesticated ruminants in sub-Saharan Africa and parts of the Caribbean. The name heartwater refers to the hydropericardium (excessive fluid in the sac surrounding the heart) commonly found associated with infection. This organism is found in membrane-bound vacuoles in endothelial cells and neutrophils and is an obligate intracellular parasite.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
176500*11830441805Island text2.6976319.034529.9407Neighbours21BLASTN76500.gbk
2160222*17877718556Island text2.6589716.546129.3032Neighbours21BLASTN160222.gbk
3252952*28640633455Island text4.3523221.364342.175Neighbours21BLASTN252952.gbk
4475290*49809922810Island text2.5735515.743632.4278Neighbours21BLASTN+475290.gbk
5587162*60588818727Island text3.4782616.61933.2196Neighbours21BLASTN587162.gbk
662705765166924613Island text2.0962121.060323.3927Neighbours21BLASTN627057.gbk
7668913*69389724985Island text2.1005920.41123.6661Neighbours21BLASTN668913.gbk
877628679962623341Island text2.0409818.119529.4521Neighbours21BLASTN776286.gbk
9825000*84423819239Island text2.5887417.029433.9363Neighbours21BLASTN825000.gbk
1085350089322139722Island text2.2862620.681432.5181Neighbours21BLASTN+853500.gbk
11978837*99940320567Island text2.8249616.797834.9405Neighbours21BLASTN978837.gbk
121051500106909917600Island text2.1688515.743625.6121Neighbours21BLASTN1051500.gbk
131125000*114678021781Island text2.7512417.665535.3593Neighbours21BLASTN1125000.gbk
141171090119512224033Island text2.4311419.616830.0308Neighbours21BLASTN1171090.gbk