Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006831: Ehrlichia ruminantium str. Gardel, complete genome

NCBI: NC_006831

Host Lineage: Ehrlichia ruminantium; Ehrlichia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was isolated from the Caribbean island of Guadeloupe. Obligate intracellular bacterium and causative agent of heartwater. This organism causes heartwater, a disease with a high mortality rate that affects both wild and domesticated ruminants in sub-Saharan Africa and parts of the Caribbean. The name heartwater refers to the hydropericardium (excessive fluid in the sac surrounding the heart) commonly found associated with infection. This organism is found in membrane-bound vacuoles in endothelial cells and neutrophils and is an obligate intracellular parasite.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
145002319218693Island text2.0978916.99917.1641Neighbours21BLASTNIslandViewer 4500.gbk
276500*11765741158Island text2.6561218.559529.4078Neighbours21BLASTN76500.gbk
3157895*17659918705Island text2.4327516.485326.6821Neighbours21BLASTN157895.gbk
4211947*23454222596Island text2.0488815.029226.9217Neighbours21BLASTN+211947.gbk
5250074*28496034887Island text3.9794321.09339.8976Neighbours21BLASTN250074.gbk
6583094*60209919006Island text3.2871217.082134.0693Neighbours21BLASTN583094.gbk
762290664732924424Island text1.9942521.96123.5412Neighbours21BLASTN622906.gbk
8664000*68952525526Island text2.1225620.92822.9618Neighbours21BLASTN664000.gbk
977273779560022864Island text2.1098717.779428.8162Neighbours21BLASTN772737.gbk
10821000*84424623247Island text2.8408818.044735.3382Neighbours21BLASTN821000.gbk
1184950088882739328Island text2.3269420.965132.2452Neighbours21BLASTN+849500.gbk
12976151*99048614336Island text3.0690417.039135.2677Neighbours21BLASTN976151.gbk
131039142106209922958Island text2.3140216.92333.5485Neighbours21BLASTN1039142.gbk
141112000*113643424435Island text2.8954317.45133.042Neighbours21BLASTN1112000.gbk
151160250118209921850Island text2.4839318.864928.9729Neighbours21BLASTN1160250.gbk