Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006824: Azoarcus sp. EbN1 plasmid 2, complete sequence

NCBI: NC_006824

Host Lineage: Aromatoleum aromaticum; Aromatoleum; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: Aromatic hydrocarbon-degrading bacterium. First isolated from sediment contaminated with ethylbenzene, this organism is capable of growing on crude oil, using polar aromatic compounds such as benzoate under both oxic and anoxic conditions. It is currently being evaluated for use in aromatic hydrocarbon bioremediation projects. Aromatoleum aromaticum is capable of metabolizing various aromatic hydrocarbons, including toluene and ethylbenzene and may be of use in bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110973512911419380Island text1.4981521.084617.5478Neighbours11BLASTN+109735.gbk