Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006677: Gluconobacter oxydans 621H, complete genome

NCBI: NC_006677

Host Lineage: Gluconobacter oxydans; Gluconobacter; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Industrially useful bacterium. Gluconobacter oxydans is a member of the Acetobacteraceae family within the alpha proteobacteria and can be isolated from flowers, fruits, and fermented beverages. This organism uses membrane-associated dehydrogenases to incompletely oxidize a wide variety of carbohydrates and alcohols. Oxidation occurs in the periplasm with the products being released into the medium via outer membrane porins and the electrons entering the electron transport chain. Able to oxidize large amounts of substrates, making it useful for industrial purposes. Among other applications, it has been used to produce 2-ketogluconic for iso-ascorbic acid production, 5-ketogluconic acid from glucose for tartaric acid production, and L-sorbose from sorbitol for vitamin C synthesis.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1215466*25730741842Island text1.8423826.767935.8264Neighbours11BLASTN+215466.gbk
229525331841523163Island text1.6767624.93246.2552Neighbours11BLASTN295253.gbk
3435652*46548229831Island text2.3806838.223234.7858Neighbours11BLASTN+IslandViewer 435652.gbk
457997560247522501Island text1.5081622.647136.5087Neighbours11BLASTN+579975.gbk
51052031107540723377Island text1.6936726.80322.8225Neighbours11BLASTN+IslandViewer 1052031.gbk
61255079*128032225244Island text2.1684828.730939.6601Neighbours11BLASTN1255079.gbk
71391984141326421281Island text1.7625825.653133.6338Neighbours11BLASTN+1391984.gbk
81431500*145622224723Island text2.1170230.47331.26Neighbours11BLASTN+IslandViewer 1431500.gbk
91503513153027026758Island text1.9334128.917829.4786Neighbours11BLASTN+IslandViewer 1503513.gbk
101596560*166542268863Island text1.8982625.47432.647Neighbours11BLASTN+IslandViewer PAI DB1596560.gbk
112012841*203080417964Island text1.6529721.95445.0238Neighbours11BLASTN+2012841.gbk
122042387206688624500Island text1.6155222.149437.4718Neighbours11BLASTN2042387.gbk
132402282*243318430903Island text2.2325330.670323.8113Neighbours11BLASTN+2402282.gbk
142575345*259598120637Island text1.4592822.209424.26Neighbours11BLASTN+IslandViewer 2575345.gbk