Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006624: Thermococcus kodakarensis KOD1, complete genome

NCBI: NC_006624

Host Lineage: Thermococcus kodakarensis; Thermococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: This organism was originally identified as Pyrococcus sp. strain KOD1. It was isolated from a solfatara on Kodakara Island, Japan. Hyperthermophilic archeon. This genus is a member of the order Thermococcales in the Euryarchaeota. Thermococcus sp. are the most commonly isolated hyperthermophilic organisms and are often isolated from marine hydrothermal vents and terrestrial hot sulfur springs. Elemental sulfur is either required for, or stimulates, growth. These obligate heterotrophs can ferment a variety of organic compounds, including peptides, amino acids, and sugars in the absence of sulfur. Thermococcus kodakaraensis is a hyperthermophilic archeon. Proteins from this organism have been extensively studied to find thermostable enzymes for industrial and biotechnological applications.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1324267*35299128725Island text2.5636837.966931.1853Neighbours313BLASTN+IslandViewer 324267.gbk
2405966*42459918634Island text1.574830.271241.8839Neighbours313BLASTNIslandViewer 405966.gbk
3498959*52684427886Island text2.8305641.260539.4649Neighbours313BLASTN+IslandViewer 498959.gbk
487352589903825514Island text2.1378535.972732.2216Neighbours313BLASTN873525.gbk
51178243120009921857Island text1.635735.60842.4013Neighbours313BLASTN+IslandViewer 1178243.gbk
61208464122680018337Island text1.5304735.277834.7759Neighbours313BLASTN1208464.gbk
71448165147034422180Island text1.5950243.281933.8516BLASTN+IslandViewer 1448165.gbk
81494424*152447830055Island text1.5972338.060223.6206Neighbours36BLASTNIslandViewer 1494424.gbk
91952554197472222169Island text1.6933533.32439.7346Neighbours313BLASTN1952554.gbk
102016000*203660520606Island text2.229431.946925.5356Neighbours313BLASTN2016000.gbk