Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006582: Bacillus clausii KSM-K16, complete genome

NCBI: NC_006582

Host Lineage: Bacillus clausii; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Alkaliphilic strain of was isolated from soil. Alkaline-tolerant bacterium. Bacillus clausii is able to tolerate high pH levels and produces alkaline-tolerant enzymes particularly alkaline proteases. B. clausii have been isolated from soil and water. This organism has also been reported to have a beneficial effect in the human gut and is being considered for use as a probiotic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
175529477722221929Island text1.7006228.617347.4144Neighbours21BLASTN+ PAI DB755294.gbk
2883922*91459930678Island text2.6476929.837219.9933Neighbours21BLASTN+IslandViewer 883922.gbk
31017000103617619177Island text2.6709527.306715.282Neighbours21BLASTN+1017000.gbk
41138987117053031544Island text3.0420435.064332.323NeighboursBLASTN+IslandViewer 1138987.gbk
51297039132111124073Island text1.9756631.893128.5515Neighbours21BLASTN+IslandViewer 1297039.gbk
62205154222466219509Island text2.3212226.972922.8388Neighbours21BLASTN2205154.gbk
72944237*299512950893Island text1.8200931.468749.7214Neighbours21BLASTN+IslandViewer 2944237.gbk
83827844384693219089Island text1.6044527.334637.0264Neighbours21BLASTN+IslandViewer 3827844.gbk
93949832397461324782Island text2.6188933.834730.2688Neighbours21BLASTN+IslandViewer 3949832.gbk
104256915*428739230478Island text4.2640232.481515.1477Neighbours21BLASTN+IslandViewer 4256915.gbk