Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006513: Azoarcus sp. EbN1, complete genome

NCBI: NC_006513

Host Lineage: Aromatoleum aromaticum; Aromatoleum; Rhodocyclaceae; Rhodocyclales; Proteobacteria; Bacteria

General Information: First isolated from sediment contaminated with ethylbenzene, this organism is capable of growing on crude oil, using polar aromatic compounds such as benzoate under both oxic and anoxic conditions. It is currently being evaluated for use in aromatic hydrocarbon bioremediation projects. Aromatic hydrocarbon-degrading bacterium. Capable of metabolizing various aromatic hydrocarbons, including toluene and ethylbenzene and may be of use in bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
138818*5794219125Island text1.6041619.605221.6693Neighbours11BLASTN+IslandViewer 38818.gbk
2148950*17362324674Island text1.5313320.49318.8786Neighbours11BLASTN+IslandViewer 148950.gbk
3286549*31309926551Island text1.9072226.457517.7407Neighbours11BLASTN+IslandViewer 286549.gbk
488112091309931980Island text3.1480333.539838.9717Neighbours11BLASTN+IslandViewer 881120.gbk
51379735*146218482450Island text1.9297426.158224.7669Neighbours11BLASTN+IslandViewer 1379735.gbk
61547092156587718786Island text1.5109821.504128.8068Neighbours11BLASTN+1547092.gbk
71695487172039324907Island text1.9007826.286717.9659Neighbours11BLASTN+IslandViewer 1695487.gbk
81949751197269222942Island text1.5443521.26423.0276Neighbours11BLASTN+IslandViewer 1949751.gbk
92526843255031523473Island text1.7048822.737321.9221Neighbours11BLASTN+IslandViewer 2526843.gbk
102708213273362325411Island text2.1866428.607526.8129Neighbours11BLASTN+IslandViewer 2708213.gbk
113486558351342826871Island text2.0452828.70430.7564Neighbours11BLASTN+IslandViewer 3486558.gbk