Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006449: Streptococcus thermophilus CNRZ1066, complete genome

NCBI: NC_006449

Host Lineage: Streptococcus thermophilus; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain was isolated from yogurt in France. Lactic acid producing bacterium used in cheese and yogert production. Streptococci are Gram-positive, nonmotile, nonsporeforming, catalase-negative cocci that occur in pairs or chains. Members of this genus vary widely in pathogenic potential. Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is a lactic acid bacteria often used as a starter culture for fermented dairy products including yogurt and cheese.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
15046*3138626341Island text3.2546929.237250.6789Neighbours21BLASTN+IslandViewer 5046.gbk
258436*7815519720Island text3.1258929.588751.9917Neighbours21BLASTN58436.gbk
3121462*14259721136Island text2.5061126.173245.5937Neighbours344BLASTN+121462.gbk
4345396*36548520090Island text2.7072128.217247.3505Neighbours21BLASTN+345396.gbk
51572000*159415422155Island text1.5648624.215741.5885Neighbours21BLASTN+1572000.gbk
61606948*162516418217Island text1.9615128.725144.4875Neighbours21BLASTN+1606948.gbk
71714994173341418421Island text4.5950324.20567.75673Neighbours21BLASTN+IslandViewer 1714994.gbk