Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006371: Photobacterium profundum SS9 chromosome 2, complete sequence

NCBI: NC_006371

Host Lineage: Photobacterium profundum; Photobacterium; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Isolated at a depth of 2500 m from the Sulu Trough. High pressure tolerant bacterium. This bioluminescent genus was originally identified in 1878 in association with hake (a marine fish) in Cape Town, South Africa. This species was originally isolated from an amphipod homogenate enrichment from the Sulu Sea. It is a genetically tractable model system for studies of low temperature and high pressure adaptation, and has been used in studies of mono- and polyunsaturated fatty acid production under these conditions.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11411335144430732973Island text1.7687236.855545.4643Neighbours41BLASTN+IslandViewer 1411335.gbk
21743982177773833757Island text1.708241.59733.2422Neighbours42IslandViewer 1743982.gbk
31848487186619917713Island text1.5033527.474541.2718Neighbours21BLASTN+IslandViewer 1848487.gbk
41973500199698923490Island text1.63528.641343.2975Neighbours53BLASTN+1973500.gbk
51997954*202569227739Island text2.0135835.271543.8475Neighbours21BLASTN+1997954.gbk