Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_006370: Photobacterium profundum SS9 chromosome 1, complete sequence

NCBI: NC_006370

Host Lineage: Photobacterium profundum; Photobacterium; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Isolated at a depth of 2500 m from the Sulu Trough. High pressure tolerant bacterium. This bioluminescent genus was originally identified in 1878 in association with hake (a marine fish) in Cape Town, South Africa. This species was originally isolated from an amphipod homogenate enrichment from the Sulu Sea. It is a genetically tractable model system for studies of low temperature and high pressure adaptation, and has been used in studies of mono- and polyunsaturated fatty acid production under these conditions.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116600018867522676Island text1.4970228.173644.0249Neighbours42BLASTN166000.gbk
2768745*79247423730Island text2.1063833.919250.383Neighbours21BLASTN+768745.gbk
384720486812520922Island text1.5611237.810147.7525Neighbours41BLASTN+IslandViewer 847204.gbk
41810842183457523734Island text1.3523934.654738.2324Neighbours21BLASTN+IslandViewer 1810842.gbk