Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006350: Burkholderia pseudomallei K96243 chromosome 1, complete sequence

NCBI: NC_006350

Host Lineage: Burkholderia pseudomallei; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was a clinical isolate from Thailand. The genome of this organism carries many genomic islands as compared to the related organism B. mallei, suggesting extensive horizontal transfer. Opportunistic pathogen. This species is an opportunistic pathogen and can cause pneumonia, bacteremia, and melioidosis. It is normally found in terrestrial environments and has been recovered from rice paddies and moist tropical soil. It is endemic in Asia and Australia, but can be found in other parts of the world. The organism can exist intracellularly and can spread through the bloodstream (bacteremia).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
159589364981453922Island text3.3586126.279127.7918Neighbours11BLASTN+IslandViewer 595893.gbk
2845513*90754062028Island text3.1074431.39428.6882Neighbours11BLASTN+IslandViewer 845513.gbk
31084930*112191036981Island text2.6227126.766423.4903Neighbours11BLASTN+IslandViewer 1084930.gbk
41316000133759921600Island text1.6047818.972826.1899Neighbours11BLASTN+IslandViewer 1316000.gbk
51909639194004630408Island text2.0145425.474922.923Neighbours11BLASTN+IslandViewer 1909639.gbk
61938631*199668958059Island text1.874923.841918.6121Neighbours11BLASTN+IslandViewer 1938631.gbk
72427000244687019871Island text1.5305327.267825.3655Neighbours11BLASTN+IslandViewer 2427000.gbk
83195165321400518841Island text1.4827218.397430.5214Neighbours11BLASTN+IslandViewer 3195165.gbk
93329477*336792338447Island text2.1237925.857234.6336Neighbours11BLASTN+IslandViewer PAI DB3329477.gbk
103710641*373649425854Island text2.4943426.204217.994Neighbours11BLASTN+IslandViewer PAI DB3710641.gbk
113865584*389809932516Island text2.3361625.206724.1272Neighbours11BLASTNIslandViewer 3865584.gbk
123957454*398298825535Island text1.9372627.339129.587Neighbours11BLASTN+IslandViewer 3957454.gbk