Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006322: Bacillus licheniformis ATCC 14580, complete genome

NCBI: NC_006322

Host Lineage: Bacillus licheniformis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Industrially important bacterium. Under starvation conditions this group of bacteria initiate a pathway that leads to endospore formation, a process that is thoroughly studied and is a model system for prokaryotic development and differentiation. Spores are highly resistant to heat, cold, dessication, radiation, and disinfectants, and enable the organism to persist in otherwise inhospitable environments. Under more inviting conditions the spores germinate to produce vegetative cells. This organism is a soil-dwelling endospore-forming microbe similar to other Bacilli. This bacterium is used extensively in the industrial production of important enzymes such as proteases, penicllinases, and amylases as well as smaller compounds like the antibiotic bacitracin and various organic metabolites. This organism is closely related to Bacillus subtilis on the basis of rRNA typing, and it has been found to occasionally cause illness in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1203932*22917125240Island text2.4095937.416819.8037Neighbours21BLASTN203932.gbk
2567987*59617928193Island text1.7197835.871316.3075Neighbours21BLASTN567987.gbk
3717953*73924121289Island text1.6922931.525129.7775Neighbours21BLASTN717953.gbk
474151677010228587Island text1.9590534.623323.7202Neighbours21BLASTNIslandViewer 741516.gbk
51119471115446034990Island text2.0197636.444728.6568Neighbours21BLASTNIslandViewer 1119471.gbk
61415863145905643194Island text1.742630.857141.8051Neighbours21BLASTNIslandViewer 1415863.gbk
71507411153018822778Island text1.4627434.837141.6799Neighbours341BLASTNIslandViewer 1507411.gbk
81536426155417417749Island text1.5240931.000723.4621Neighbours21BLASTNIslandViewer 1536426.gbk
91932847195639223546Island text1.4748430.572823.9505Neighbours21BLASTNIslandViewer 1932847.gbk
101959918198213922222Island text1.624529.474731.3376Neighbours21BLASTN1959918.gbk
111994000201730223303Island text1.4363734.241218.0838Neighbours23BLASTN1994000.gbk
122173500220028526786Island text1.644231.993528.1703Neighbours21BLASTNIslandViewer 2173500.gbk
132592176*261693124756Island text1.9264134.184429.5133Neighbours21BLASTN2592176.gbk
142658587268279124205Island text1.6872132.516730.4757Neighbours21BLASTNIslandViewer 2658587.gbk
152851215287524024026Island text1.700132.305135.0292Neighbours21BLASTNIslandViewer 2851215.gbk
162886404*291144025037Island text1.8604231.368621.5441Neighbours31BLASTN2886404.gbk
173198829322132222494Island text1.610328.860722.0256Neighbours21BLASTNIslandViewer 3198829.gbk
183418268346132643059Island text1.7190134.270527.2626Neighbours21BLASTNIslandViewer 3418268.gbk
193628143365369825556Island text2.2700434.726121.8695Neighbours21BLASTN3628143.gbk
204048990407412425135Island text1.5623332.052526.0251Neighbours31BLASTN4048990.gbk
214149500*418760938110Island text2.8299338.205124.4594Neighbours21BLASTNIslandViewer 4149500.gbk