Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006300: Mannheimia succiniciproducens MBEL55E, complete genome

NCBI: NC_006300

Host Lineage: Mannheimia succiniciproducens; Mannheimia; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: This bacterium was isolated from a bovine rumen. Succinic acid producing bacterium. This bacterium is able to produce a large amount of succinic acid from readily available agricultural byproducts. Succinic acid is an important component in the manufacture of synthetic resins and biodegradable polymers. Mannheimia succiniciproducens can grow on media which includes whey, a byproduct of the cheese industry which is normally discarded, and corn steep liquor (CSL), which is a byproduct of corn starch production. The organism has been able to produce production-level amounts of succinic acid in both batch and continuous cultures in media containing these inexpensive components.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1604848565225169Island text1.9979123.997823.3052Neighbours24BLASTNIslandViewer 60484.gbk
260051663151030995Island text3.2543526.121520.0324Neighbours21BLASTN600516.gbk
31140635116709926465Island text1.8052724.510428.0682Neighbours21BLASTN1140635.gbk
41624254*164509920846Island text1.5690823.22323.9514Neighbours21BLASTNIslandViewer 1624254.gbk