Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006274: Bacillus cereus E33L, complete genome

NCBI: NC_006274

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This strain (originally ZK, now E33L; Ethosha National Park, Namibia; isolate number 33; Large colony) was isolated from a swab of a dead zebra carcass in April, 1996. Soil microorganism that can cause food poisoning. This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165992268275922838Island text1.5793222.972427.9145Neighbours21BLASTN+659922.gbk
276587078870622837Island text2.4310321.944941.0647Neighbours21BLASTN+765870.gbk
31040836*105962518790Island text1.6988122.960231.4289Neighbours21BLASTN+1040836.gbk
41367377139069223316Island text1.7530622.358340.3277Neighbours21BLASTN1367377.gbk
51547819157118123363Island text1.5609823.402534.247Neighbours21BLASTN+1547819.gbk
62779380280209922720Island text1.5973422.446534.3586Neighbours21BLASTN2779380.gbk
73490598351459924002Island text1.6984826.395736.4881Neighbours21BLASTN+3490598.gbk
83661194*367978418591Island text1.644223.01635.2814Neighbours21BLASTN3661194.gbk
93697255*372593028676Island text1.6332324.977932.4229Neighbours21BLASTN3697255.gbk
103736703*375516418462Island text1.9522923.296737.4802Neighbours21BLASTN3736703.gbk
113773335*380046127127Island text1.7477125.83136.4271Neighbours21BLASTN3773335.gbk
123805134*382901423881Island text1.946923.337239.1521Neighbours21BLASTN3805134.gbk
134031246404927818033Island text1.5913523.349332.1781Neighbours21BLASTN4031246.gbk
144159096*417709918004Island text1.6848322.975434.7302Neighbours21BLASTN4159096.gbk
154295730*431935823629Island text1.7329623.229931.2175Neighbours21BLASTN4295730.gbk
164408734*442723518502Island text1.7755623.273327.2993Neighbours21BLASTN4408734.gbk
174448293446677918487Island text1.7418523.24633.1526Neighbours21BLASTN4448293.gbk
184563455*458739323939Island text1.677125.79342.0092Neighbours21BLASTN4563455.gbk
194742489*476749725009Island text1.5527823.190328.7672Neighbours21BLASTN4742489.gbk
204814601483509920499Island text1.6065824.425532.0867Neighbours21BLASTN4814601.gbk
214910465*493271922255Island text1.5732926.315832.7315Neighbours21BLASTN4910465.gbk
224940922*497759936678Island text1.6651424.137837.0527Neighbours21BLASTN+4940922.gbk
235085860510874322884Island text1.5067427.827142.6666Neighbours21BLASTN+5085860.gbk
245122500*514359021091Island text1.7367423.788135.7185Neighbours21BLASTN5122500.gbk
255155395*517456619172Island text1.8766922.71438.5187Neighbours21BLASTN+5155395.gbk
265267585*529331825734Island text1.6468122.532231.3863Neighbours21BLASTN5267585.gbk