Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006270: Bacillus licheniformis ATCC 14580, complete genome

NCBI: NC_006270

Host Lineage: Bacillus licheniformis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Industrially important bacterium. Under starvation conditions this group of bacteria initiate a pathway that leads to endospore formation, a process that is thoroughly studied and is a model system for prokaryotic development and differentiation. Spores are highly resistant to heat, cold, dessication, radiation, and disinfectants, and enable the organism to persist in otherwise inhospitable environments. Under more inviting conditions the spores germinate to produce vegetative cells. This organism is a soil-dwelling endospore-forming microbe similar to other Bacilli. This bacterium is used extensively in the industrial production of important enzymes such as proteases, penicllinases, and amylases as well as smaller compounds like the antibiotic bacitracin and various organic metabolites. This organism is closely related to Bacillus subtilis on the basis of rRNA typing, and it has been found to occasionally cause illness in humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1204000*23010926110Island text2.0304434.283852.5886Neighbours319BLASTN+204000.gbk
2568171*59638928219Island text1.9099434.457254.2942Neighbours319BLASTN+568171.gbk
3718169*74061322445Island text1.9222234.079155.5732Neighbours319BLASTN+718169.gbk
4741731*76874727017Island text2.35236.855220.4779Neighbours319BLASTNIslandViewer 741731.gbk
51119000115060331604Island text1.7363135.839616.3399Neighbours23BLASTN+1119000.gbk
61415001145819443194Island text1.6711132.744945.0778Neighbours37BLASTN+IslandViewer 1415001.gbk
71511000152932718328Island text1.7874733.05229.5554Neighbours341BLASTN+IslandViewer 1511000.gbk
81535770155387018101Island text2.0348835.139324.7777Neighbours330BLASTN+IslandViewer 1535770.gbk
91936952195554418593Island text1.6879832.224251.0199Neighbours21BLASTNIslandViewer 1936952.gbk
102172693*219944026748Island text2.0380336.747829.7233Neighbours23BLASTN2172693.gbk
112591317*261497023654Island text1.681530.023742.182Neighbours31BLASTN2591317.gbk
122657726*268193124206Island text1.4634636.032843.4695Neighbours319BLASTNIslandViewer 2657726.gbk
132850354287473324380Island text1.483531.365524.595Neighbours37BLASTN+2850354.gbk
142886193*290869222500Island text1.516229.602424.534Neighbours31BLASTN+2886193.gbk
153418097346443746341Island text1.6483631.865828.4666Neighbours319BLASTN+IslandViewer 3418097.gbk
163627974365450026527Island text1.978835.039431.0978Neighbours319BLASTN3627974.gbk
174014000403670422705Island text1.6487732.596131.8528Neighbours31BLASTN+4014000.gbk
184048876*407401025135Island text1.7079933.434832.1222Neighbours31BLASTN+4048876.gbk
194149004*418759938596Island text1.8621231.679420.3261Neighbours21BLASTN+IslandViewer 4149004.gbk