Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006156: Borrelia garinii PBi chromosome linear, complete sequence

NCBI: NC_006156

Host Lineage: Borrelia bavariensis; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain (OspA serotype 4) was isolated in Germany from the cerebrospinal fluid of a patient with neuroborreliosis. This is a spirochete causing Lyme borreliosis. It is transmitted by rodents. Human pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117637*4054322907Island text1.6466413.472826.5258Neighbours2117637.gbk
227141029519623787Island text1.5085713.369428.0363Neighbours21BLASTN PAI DB271410.gbk
3389152*41109921948Island text1.571416.363434.0483Neighbours21BLASTN389152.gbk
4427358*45413526778Island text2.3007419.44535.768Neighbours21BLASTN427358.gbk
5484951*50418319233Island text1.934514.199330.6006Neighbours21BLASTN+484951.gbk
6685344*70851723174Island text1.7616811.794724.595Neighbours21BLASTN685344.gbk