Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006138: Desulfotalea psychrophila LSv54, complete genome

NCBI: NC_006138

Host Lineage: Desulfotalea psychrophila; Desulfotalea; Desulfobulbaceae; Desulfobacterales; Proteobacteria; Bacteria

General Information: This organism was isolated from marine sediments off of the coast of Svalbard, and can grow at temperatures as low as -1.7 degrees C. Sulfate-reducing bacterium. This organism grows on more complex organic compounds such as acetate, propionate, butyrate, lactate as well as by using simpler compounds such as hydrogen. This organism is an important part of global biogeochemical cycling of carbon and other nutrients.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1239024710123200Island text1.7375730.504946.2663Neighbours21BLASTN+IslandViewer 23902.gbk
222583226772241891Island text1.6279832.441627.147Neighbours353BLASTN+225832.gbk
327323730009526859Island text1.5652834.009443.5697Neighbours353BLASTN273237.gbk
443200045525623257Island text1.66130.623815.5805Neighbours21+IslandViewer 432000.gbk
5656000*67877622777Island text1.8830930.970334.3525Neighbours353BLASTN+IslandViewer 656000.gbk
6799174*82759928426Island text1.6176134.156150.4477Neighbours381BLASTNIslandViewer 799174.gbk
785769288057422883Island text1.715127.951751.7846Neighbours353BLASTN+857692.gbk
81245944*128539239449Island text1.4953832.316344.2819Neighbours314BLASTN1245944.gbk
91571878*159099419117Island text1.4739632.794320.2948Neighbours21BLASTN1571878.gbk
101735723177618340461Island text2.0262531.027334.0528Neighbours353BLASTN+IslandViewer 1735723.gbk
111921424*194329521872Island text1.7642434.552253.6941Neighbours381BLASTN+1921424.gbk
122288261231461826358Island text2.6250935.921219.8319Neighbours21BLASTN+IslandViewer 2288261.gbk
132341975237409932125Island text1.7206748.160139.5215BLASTNIslandViewer 2341975.gbk
142379332240570926378Island text1.549633.92137.1401Neighbours374BLASTNIslandViewer 2379332.gbk
152397652242659928948Island text1.5944343.371734.6402BLASTN2397652.gbk
162630338265211621779Island text2.7874833.351226.0879Neighbours212630338.gbk
172683545*273303949495Island text1.6933631.727932.4656Neighbours21BLASTN+IslandViewer 2683545.gbk
183355028*337842323396Island text1.4366631.268248.3859Neighbours353BLASTN+3355028.gbk