Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006129: Borrelia garinii PBi plasmid lp54, complete sequence

NCBI: NC_006129

Host Lineage: Borrelia bavariensis; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This is a spirochete causing Lyme borreliosis. It is transmitted by rodents. This strain (OspA serotype 4) was isolated in Germany from the cerebrospinal fluid of a patient with neuroborreliosis. Human pathogen.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111509615096Island text2.2657612.582127.9876Neighbours21BLASTN1.gbk
2386006099922400Island text2.0270112.455422.987Neighbours21BLASTN38600.gbk