Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006087: Leifsonia xyli subsp. xyli str. CTCB07, complete genome

NCBI: NC_006087

Host Lineage: Leifsonia xyli; Leifsonia; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causes stunting in sugarcand and Bermuda grass. This species comprises two xylema-associated, fastidious, slow growing subspecies that cause ratoon stunting (growth-hindering) disease of sugarcane and Bermuda grass stunting disease, respectively. Pathogenicity has been associated with production of a toxin.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111092810928Island text1.5441320.127128.1063Neighbours11BLASTN1.gbk
228490*7567147182Island text2.0752220.668319.2926NeighboursBLASTN+IslandViewer 28490.gbk
3177375*20205824684Island text1.483718.810817.1824Neighbours11BLASTN177375.gbk
423750026462927130Island text2.1351419.653822.4673Neighbours11BLASTN+IslandViewer 237500.gbk
5345976*40567959704Island text1.8096721.019719.4909Neighbours11BLASTN+IslandViewer 345976.gbk
6676318*69499818681Island text1.4827817.029416.2687Neighbours11BLASTN676318.gbk
776508178509920019Island text1.7001318.114911.8114Neighbours11BLASTN+IslandViewer 765081.gbk
888576091259926840Island text2.3930321.587319.6756Neighbours11BLASTN+IslandViewer 885760.gbk
91334500*136229227793Island text2.1150122.036525.2104Neighbours11BLASTN+IslandViewer 1334500.gbk
101425682144554519864Island text1.5539317.55089.76773NeighboursBLASTN+1425682.gbk
111483761*150739223632Island text2.1239417.301316.9753Neighbours11BLASTN+IslandViewer 1483761.gbk
122008000202809920100Island text1.9374617.001633.0917Neighbours11BLASTN+2008000.gbk
132214209*223440320195Island text1.5435616.810613.5796Neighbours11BLASTN+2214209.gbk
142292791231485822068Island text1.8691918.447120.8924Neighbours11BLASTN+IslandViewer 2292791.gbk
152326143235421928077Island text2.6362323.211519.3764Neighbours11BLASTN+IslandViewer PAI DB2326143.gbk
162439252246595526704Island text2.3523220.849218.565Neighbours11BLASTN+IslandViewer 2439252.gbk
172470708250154730840Island text2.1876122.531618.5309NeighboursBLASTN+IslandViewer 2470708.gbk