Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_006055: Mesoplasma florum L1, complete genome

NCBI: NC_006055

Host Lineage: Mesoplasma florum; Mesoplasma; Entomoplasmataceae; Entomoplasmatales; Tenericutes; Bacteria

General Information: Isolated from the surface of the lemon tree flower. Bacterium which lacks a cell wall. This organism is a member of the Mollicutes which are bacteria that lack a cell wall and are obligately parasitic on a number of organisms including mammals, insects, and plants. Mesoplasma florum is a nonpathogenic organism and is nonmotile and is not closely related to Mycoplasma genitalium and Mycoplasma pneumoniae. Unlike other Mollicutes, this species does not require sterol to be supplied in the media for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
144649*7344628798Island text1.6995916.146124.9223Neighbours21BLASTN+44649.gbk
2140686*17078530100Island text2.7033418.988431.7002Neighbours21BLASTN+140686.gbk
3183823*21230928487Island text3.2140319.039131.9014Neighbours21BLASTN+183823.gbk
4456711*48395927249Island text3.7199318.996833.0917Neighbours21BLASTN+456711.gbk
5689956*71165321698Island text1.6500517.292424.447Neighbours21BLASTN+689956.gbk
6769418*79599926582Island text2.1554413.901422.6093Neighbours21BLASTN+769418.gbk