Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005966: Acinetobacter sp. ADP1, complete genome

NCBI: NC_005966

Host Lineage: Acinetobacter; Acinetobacter; Moraxellaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain is a a derivative of the well-studied strain BD413 (formerly Acinetobacter calcoaceticus). It has a remarkable proficiency for natural transformation by DNA. Acinetobacter sp. strain ADP1 is a nutritionally versatile soil bacterium closely related to representatives of the well-characterized Pseudomonas aeruginosa and Pseudomonas putida.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1696899119521507Island text2.0549722.694221.6551Neighbours21BLASTN+ PAI DB69689.gbk
2159232*18289723666Island text1.5756421.808129.157Neighbours21BLASTN+159232.gbk
371559173850722917Island text1.559825.296643.432Neighbours44BLASTN715591.gbk
492300895142228415Island text2.2885426.741940.3767Neighbours21BLASTN+923008.gbk
51780468*180046419997Island text1.698421.826420.1182Neighbours21BLASTN+IslandViewer 1780468.gbk
61832066185759025525Island text1.4648322.94517.6148Neighbours21BLASTN+1832066.gbk
72110549213463124083Island text2.6154324.674510.1182Neighbours21BLASTN+IslandViewer PAI DB2110549.gbk
82157677217610518429Island text1.6170721.750414.612Neighbours21BLASTN+IslandViewer 2157677.gbk
92653945267837724433Island text3.4291825.363911.7097Neighbours21BLASTNIslandViewer 2653945.gbk
102699483*274434544863Island text1.8289524.053522.3106Neighbours21BLASTN+IslandViewer 2699483.gbk
113334864335435519492Island text1.6811522.813330.2351Neighbours21BLASTN+3334864.gbk