Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005955: Bartonella quintana str. Toulouse, complete genome

NCBI: NC_005955

Host Lineage: Bartonella quintana; Bartonella; Bartonellaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Bartonella quintana str. Toulouse was isolated from human blood in Toulouse, France in 1993. Causative agent of trench fever. This group of alpha proteobacteria are unique among pathogens in that they cause angiogenic lesions. This organism was first identified as the causative agent of louse-born trench fever during World War I. Up to 800 000 were infected in the trenches because of the louse insect vector that was widespread due to poor sanitation. The disease is now found associated with immunocompromized patients, especially HIV patients and homeless alcoholics.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1139907*15764917743Island text1.7914122.583343.4036Neighbours21BLASTN139907.gbk
2173436*19910325668Island text1.7522528.998745.9224Neighbours21BLASTN173436.gbk
342714244517218031Island text1.5058822.774840.9672Neighbours21BLASTN427142.gbk
4841781*86085019070Island text1.5195423.063643.7873Neighbours21BLASTN841781.gbk
5947500*97976232263Island text1.5772625.817747.9576Neighbours21BLASTN+947500.gbk
61029435*105559926165Island text1.7233525.166443.117Neighbours21BLASTN1029435.gbk
71166521*119028523765Island text2.0848134.216438.2097Neighbours21BLASTN1166521.gbk
81205836*122877522940Island text1.4639425.431741.5215Neighbours21BLASTN+1205836.gbk
91259393*127892419532Island text1.5769323.09435.3697Neighbours314BLASTN1259393.gbk
101284500*130257118072Island text1.4895827.097529.3093Neighbours314BLASTN1284500.gbk
111540838156386123024Island text2.2551924.732545.2503Neighbours21BLASTN+1540838.gbk