Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005877: Picrophilus torridus DSM 9790, complete genome

NCBI: NC_005877

Host Lineage: Picrophilus torridus; Picrophilus; Picrophilaceae; Thermoplasmatales; Euryarchaeota; Archaea

General Information: This organism is a thermoacidophile, and can grow at temperatures around 60C and in environments where the pH drops to 0. The name reflects the area where the organism was isolated, which was a hot dry soil in Kawayu, in northern Japan, that was solfataric (volcanic area that gives off sulfur). The genome also encodes a large number of proton-driven secondary transporters which represents another adaptation to the acid environment. This organism expresses a surface layer (S-layer) that consists of a semicrystalline array of proteins outside the cell membrane.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1198522*21990521384Island text1.63617.749134.8798Neighbours21BLASTN198522.gbk
2284829*30634721519Island text1.6062423.372639.5562Neighbours21BLASTN+284829.gbk
3509877*53290123025Island text1.5514719.060137.5746Neighbours21BLASTN509877.gbk
4665092*69502029929Island text2.2713325.879442.9689Neighbours21BLASTN+665092.gbk
5864118*89045226335Island text2.0346219.079434.4549Neighbours21BLASTN+IslandViewer 864118.gbk