Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005835: Thermus thermophilus HB27, complete genome

NCBI: NC_005835

Host Lineage: Thermus thermophilus; Thermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: This organism was originally isolated from a natural thermal environment in Japan. Thermophilic bacterium. This species is extremely thermophilic and has been useful in analyzing bacterial life and biochemical processes under high temperature as well as being a source of thermophilic enzymes.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1259702*28781928118Island text2.6404522.97423.1709Neighbours11BLASTN+IslandViewer 259702.gbk
2823187*84808124895Island text1.5166912.457421.5069Neighbours11BLASTN823187.gbk
31345790*136952723738Island text1.8053819.711315.3585Neighbours11BLASTN+IslandViewer 1345790.gbk
41773482*180459931118Island text2.5010322.87916.1293Neighbours11BLASTN+IslandViewer 1773482.gbk