Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005823: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

NCBI: NC_005823

Host Lineage: Leptospira interrogans; Leptospira; Leptospiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a patient with severe leptospirosis during an epidemic in 1996. This organism is the causative agent of leptospirosis, a tropical zoonosis transmitted by direct contact with the urine of infected animals. This motile and obligately aerobic organism grows optimally at 28-30 C. Many serovars are adapted for specific mammalian reservoir hosts, which harbor the organisms in their renal tubules and shed them in their urine. Because of the large spectrum of animal species that serve as reservoirs, leptospirosis is considered to be the world's most widespread zoonotic disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156959460570436111Island text1.7113421.032331.4466Neighbours341BLASTN+IslandViewer 569594.gbk
2905500*93022224723Island text1.7230229.679823.4621Neighbours341BLASTN+IslandViewer 905500.gbk
31105524*113560530082Island text1.8250321.327527.5627Neighbours341BLASTN1105524.gbk
42566588258537518788Island text1.5067716.29389.33122Neighbours21BLASTN2566588.gbk
52840000*286249922500Island text1.3440315.746623.9554BLASTN2840000.gbk
63280000*330396423965Island text1.4940621.826432.9395Neighbours341BLASTN3280000.gbk
73454000*347838724388Island text1.6240617.685625.2436Neighbours341BLASTN3454000.gbk
83487108351274225635Island text2.1018221.50336.1918Neighbours341BLASTNIslandViewer 3487108.gbk