Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005295: Ehrlichia ruminantium str. Welgevonden, complete genome

NCBI: NC_005295

Host Lineage: Ehrlichia ruminantium; Ehrlichia; Anaplasmataceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This strain was isolated in mice from an infected tick. Obligate intracellular bacterium and causative agent of heartwater. This organism causes heartwater, a disease with a high mortality rate that affects both wild and domesticated ruminants in sub-Saharan Africa and parts of the Caribbean. The name heartwater refers to the hydropericardium (excessive fluid in the sac surrounding the heart) commonly found associated with infection. This organism is found in membrane-bound vacuoles in endothelial cells and neutrophils and is an obligate intracellular parasite.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1219954409922105Island text2.3536815.883417.7488Neighbours21BLASTNIslandViewer 21995.gbk
295500*13790542406Island text2.695419.811932.3877Neighbours21BLASTN95500.gbk
3272708*30641333706Island text4.2333521.949442.2439Neighbours314BLASTN272708.gbk
4607319*62609918781Island text2.9922217.93831.4724Neighbours21BLASTN607319.gbk
564727567182424550Island text3.1977417.263534.4744Neighbours21BLASTN647275.gbk
6689500*71405024551Island text2.091821.891923.9072Neighbours21BLASTN689500.gbk
779643781969823262Island text2.0611821.391723.1967Neighbours21BLASTN+796437.gbk
8845000*86826523266Island text2.0990218.114929.5331Neighbours314BLASTN+845000.gbk
987350091393940440Island text2.9247117.755734.3337Neighbours314BLASTN+873500.gbk
10998000*101814320144Island text2.3623421.380132.8217Neighbours314BLASTN+998000.gbk
111067421109013222712Island text3.2507817.238836.6912Neighbours314BLASTN1067421.gbk
121146500*116818121682Island text2.4212917.263531.167Neighbours314BLASTN+1146500.gbk
131192711121559922889Island text2.7077918.50934.978Neighbours21BLASTN1192711.gbk