Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005213: Nanoarchaeum equitans Kin4-M, complete genome

NCBI: NC_005213

Host Lineage: Nanoarchaeum equitans; Nanoarchaeum; Nanoarchaeaceae; ; Nanoarchaeota; Archaea

General Information: This organism was isolated from a submarine hot vent. Hyperthermophilic symbiont. This organism is a hyperthermophilic, anaerobic, obligate symbiont that has only been found in co-culture with Ignicoccus species, attached to the outside of these cells.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
163752*8747023719Island text1.9801616.197426.2095Neighbours21BLASTN63752.gbk
2202400*409281206882Island text1.9130813.218923.791Neighbours21BLASTN202400.gbk
3295994*38041484421Island text1.6657513.752423.5488Neighbours21BLASTN295994.gbk
4384998*40919824201Island text1.7663826.517922.8266Neighbours21BLASTN384998.gbk