Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005125: Gloeobacter violaceus PCC 7421, complete genome

NCBI: NC_005125

Host Lineage: Gloeobacter violaceus; Gloeobacter; ; Gloeobacterales; Cyanobacteria; Bacteria

General Information: This organism was isolated from a calcereous (chalky) rock in Switzerland. Photosynthetic bacterium. This organism is an obligate photoautotroph that lacks thylakoid membranes and probably has its photosynthetic machinery in the cytoplasmic membrane with various components exposed to the periplasm whereas in other cyanobacteria the components are situated in the thylakoid membrane and are exposed to the cytoplasm. This unusual arrangement may be due to the lack of various fatty acids that are found in the thylakoid membrane in other cyanobacteria. It has been predicted that this organism was one of the earliest to diverge from the cyanobacterial line.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
118270120609923399Island text1.7362226.726225.0288Neighbours11BLASTN+IslandViewer 182701.gbk
248050051032729828Island text1.7495327.844325.5817Neighbours11BLASTN480500.gbk
363733366169324361Island text1.8086128.325123.3382Neighbours11BLASTN+637333.gbk
476072180474844028Island text1.5339524.915229.3865Neighbours11BLASTN760721.gbk
5839000*86171722718Island text1.6781527.191826.1451Neighbours11BLASTN+839000.gbk
61161000119835837359Island text1.8882629.852925.8621Neighbours11BLASTN+IslandViewer 1161000.gbk
72107088213038323296Island text1.7240629.606624.2636Neighbours11BLASTN2107088.gbk
82269343229368924347Island text1.4145423.230820.8125Neighbours11BLASTN+IslandViewer 2269343.gbk
92366778*239059123814Island text1.4291827.778531.5934Neighbours11BLASTN2366778.gbk
102393701241592322223Island text1.550425.956527.2189Neighbours11BLASTN+2393701.gbk
112456889248293326045Island text2.0457626.209926.2507Neighbours11BLASTNIslandViewer 2456889.gbk
122811986285535243367Island text1.8760229.540423.0792Neighbours11BLASTN+IslandViewer 2811986.gbk
132887319291879031472Island text2.0065630.890128.0592Neighbours11BLASTN+IslandViewer 2887319.gbk
143158667318259623930Island text1.6541627.635621.1171Neighbours11IslandViewer 3158667.gbk
153420270344513224863Island text2.0304533.027823.1164Neighbours11BLASTN+3420270.gbk
163446470*347296926500Island text2.3316130.935128.9166Neighbours11BLASTN+IslandViewer 3446470.gbk
173570385359009919715Island text1.6022726.766219.3766NeighboursBLASTNIslandViewer 3570385.gbk
183981987401263230646Island text2.9237937.466327.6978Neighbours11BLASTNIslandViewer 3981987.gbk
194062025408159919575Island text1.4823924.401119.8288Neighbours11BLASTN+IslandViewer 4062025.gbk
204093352*411690423553Island text1.7705626.0329.625Neighbours11BLASTN4093352.gbk
214117096*414016723072Island text1.4675122.671417.7366Neighbours11BLASTNIslandViewer 4117096.gbk
224283345430224018896Island text1.5371523.24523.2204Neighbours11BLASTN+4283345.gbk
234524868454798523118Island text1.7088829.339820.3978Neighbours11BLASTNIslandViewer 4524868.gbk
244557889458056022672Island text1.6314926.355821.867Neighbours11BLASTN+IslandViewer 4557889.gbk