Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005090: Wolinella succinogenes DSM 1740, complete genome

NCBI: NC_005090

Host Lineage: Wolinella succinogenes; Wolinella; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: Cow rumen bacterium. Wolinella succinogenes is most commonly isolated from the bovine rumen and is considered nonpathogenic, however, this organism has also been isolated from the human gingiva and dental root canal infections.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11033746*106167527930Island text1.6635431.026135.4691Neighbours365BLASTN+IslandViewer 1033746.gbk
21082213110311120899Island text1.5678229.438228.0891Neighbours365BLASTN+1082213.gbk
31519035154371024676Island text1.7363831.618732.2534Neighbours365BLASTN+IslandViewer 1519035.gbk
41812833184098628154Island text2.9886136.312321.4326Neighbours365BLASTN+IslandViewer 1812833.gbk
51921154*194243121278Island text1.5997629.014425.9724Neighbours365BLASTN+IslandViewer 1921154.gbk