Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005071: Prochlorococcus marinus str. MIT 9313, complete genome

NCBI: NC_005071

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
187907*14203654130Island text3.8457738.992535.7452Neighbours21BLASTN+IslandViewer 87907.gbk
217236419918026817Island text3.9335439.017322.6483Neighbours13BLASTN+172364.gbk
326552028884023321Island text1.4700433.30534.3282Neighbours13BLASTN+IslandViewer 265520.gbk
4288922*34134152420Island text2.2456631.401622.4281Neighbours13BLASTN+IslandViewer 288922.gbk
5523423*55229628874Island text2.0128333.546422.2772Neighbours21BLASTN+523423.gbk
6588541*61083122291Island text1.5582530.684620.2643Neighbours13BLASTN+588541.gbk
7671084*69665125568Island text2.0427133.097822.7007Neighbours13BLASTN671084.gbk
8704882*73112726246Island text3.8084936.133531.8918Neighbours13BLASTN+704882.gbk
9786000*81539729398Island text1.9035432.419823.7092Neighbours21BLASTNIslandViewer 786000.gbk
10835005*85830323299Island text1.7933729.606934.2896Neighbours13BLASTN+835005.gbk
11866468*88559919132Island text2.3988429.569628.6363Neighbours21BLASTN866468.gbk
1291350093959926100Island text3.0649836.419634.795Neighbours21BLASTN913500.gbk
13988815*100778518971Island text1.5117230.772720.9069Neighbours13BLASTN988815.gbk
141064000*108618222183Island text1.8623529.106919.0888Neighbours13BLASTN+1064000.gbk
151111605*113995128347Island text2.2030333.77633.2647Neighbours21BLASTN+1111605.gbk
161643557*168115837602Island text1.7975629.676721.6914Neighbours13BLASTN+IslandViewer 1643557.gbk
171903581*192609922519Island text1.6088628.158438.8537Neighbours13BLASTNIslandViewer 1903581.gbk
182180000*220361523616Island text1.9622833.472917.8486Neighbours13BLASTN2180000.gbk
192223795*224237218578Island text1.5574129.318721.7627Neighbours13BLASTN+IslandViewer 2223795.gbk