Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_005061: Candidatus Blochmannia floridanus, complete genome

NCBI: NC_005061

Host Lineage: Blochmannia floridanus; Blochmannia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Ant endosymbiont. This organism is an endosymbiont that is associated with carpenter ants. It is related to other endosymbionts like Buchnera and Wigglesworthia. Within the ant host, the bacteria live within specialized cells called bacteriocytes in the midgut and ovaries.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165861*8718421324Island text1.9960116.143935.9251Neighbours21BLASTN65861.gbk
296536*14201245477Island text2.3232617.221834.743Neighbours21BLASTN96536.gbk
3214168*23856824401Island text2.1148916.76535.6687Neighbours21BLASTN214168.gbk
452470454944624743Island text4.0133416.433434.6131Neighbours21BLASTN524704.gbk
5594500*62449129992Island text3.0131215.827234.2307Neighbours21BLASTN594500.gbk
6647567*67214524579Island text3.5174316.919135.4545Neighbours21BLASTN+647567.gbk