Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_005042: Prochlorococcus marinus subsp. marinus str. CCMP1375, complete

NCBI: NC_005042

Host Lineage: Prochlorococcus marinus; Prochlorococcus; Prochlorococcaceae; Prochlorales; Cyanobacteria; Bacteria

General Information: Marine cyanobacterium. This non-motile bacterium is a free-living marine organism that is one of the most abundant, as well as the smallest, on earth, and contributes heavily to carbon cycling in the marine environment. This cyanobacterium grows in areas of nitrogen and phosphorus limitation and is unique in that it utilizes divinyl chlorophyll a/b proteins as light-harvesting systems instead of phycobiliproteins. These pigments allow harvesting of light energy from blue wavelengths at low light intensity.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116553018838822859Island text1.5887921.48236.996Neighbours21BLASTN165530.gbk
251393154201128081Island text1.7823225.603923.0756Neighbours21BLASTN+513931.gbk
3830000*85211122112Island text1.5492718.658827.4272Neighbours21BLASTN+830000.gbk
41422000*144056618567Island text1.5115119.148235.991Neighbours21+1422000.gbk
51480761*151006629306Island text1.5074919.73934.0452Neighbours21BLASTN1480761.gbk
61552074*157326321190Island text1.5992121.220431.8772Neighbours21BLASTN1552074.gbk
71719055*174729928245Island text1.4702619.139128.4078Neighbours21BLASTN1719055.gbk