Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_004757: Nitrosomonas europaea ATCC 19718, complete genome

NCBI: NC_004757

Host Lineage: Nitrosomonas europaea; Nitrosomonas; Nitrosomonadaceae; Nitrosomonadales; Proteobacteria; Bacteria

General Information: Ammonia-oxidizing bacterium. This organism is an obligate chemo-lithoautotroph as it only uses ammonia and carbon dioxide and mineral salts for growth, and is an important part of the global biogeochemical nitrogen cycle. It can derive all energy requirements from the oxidation of ammonia to nitrate, driving global nitrogen from the reduced insoluble form to the oxidized and potentially gaseous form (including NO and NO2 which are greenhouse gases). The energy derived from ammonia oxidation is in turn used to drive carbon fixation. This bacterium also provides plants with a readily available form of nitrogen, is important in wastewater treatment, and may be involved in bioremediation of sites contaminated with toxic compounds.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1230541*25274022200Island text1.7338732.982741.8957Neighbours41BLASTN+230541.gbk
226716528746320299Island text1.7268632.856119.0632Neighbours41BLASTN+IslandViewer 267165.gbk
3427483*47957952097Island text2.4278338.524536.0428Neighbours41BLASTNIslandViewer 427483.gbk
490541793018024764Island text1.7992134.619115.9548Neighbours11BLASTN+IslandViewer 905417.gbk
51021355*105233830984Island text1.7526636.61738.3161Neighbours41BLASTN+IslandViewer 1021355.gbk
61089057111459925543Island text1.7666132.920928.3652Neighbours41BLASTN+1089057.gbk
71926074194517819105Island text1.5884229.41724.4183Neighbours41BLASTN+1926074.gbk
82213806*225184038035Island text2.1994439.923143.5865Neighbours41BLASTN2213806.gbk
92412161243847726317Island text1.6955533.068937.0542Neighbours41BLASTN+2412161.gbk
102451919247341121493Island text1.4985331.2541.9966Neighbours322BLASTN+2451919.gbk
112657490*268195024461Island text1.4798830.392816.4515Neighbours41BLASTN+2657490.gbk
122730057278354453488Island text1.6642436.874522.4035Neighbours11BLASTN+IslandViewer 2730057.gbk