Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004722: Bacillus cereus ATCC 14579, complete genome

NCBI: NC_004722

Host Lineage: Bacillus cereus; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Soil microorganism that can cause food poisoning. This organism is a soil-dwelling opportunistic pathogen that causes food poisoning in infected individuals. There are two forms of food poisoning that occur, one is rapid onset (emetic) and the other is late onset (diarrheal). The rapid onset is characterized by nausea and vomiting while the late onset is characterized by diarrhea and abdominal pain. The emetic disease is caused by a small stable dodecadepsipeptide cerulide whereas the diarrheal disease is caused by a heat labile enterotoxin. Some strains produce a potent cytotoxin that forms a pore in the membrane of eukaryotic cells and causes necrotic enteritis (death of intestinal epithelial cells) while the unique tripartite membrane lytic toxin hemolysin BL contributes to the diarrheal disease and destructive infections of the eye.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
165095066943618487Island text1.5035524.811535.5159Neighbours21BLASTN+650950.gbk
21008500103115022651Island text1.672726.247535.9502Neighbours21BLASTN+1008500.gbk
31033000105355520556Island text2.1749524.856141.3229Neighbours21BLASTN+1033000.gbk
41108649113212523477Island text1.5360325.066934.8885Neighbours21BLASTN1108649.gbk
51352000137431822319Island text1.731323.574334.2977Neighbours21BLASTN1352000.gbk
61804788*185511050323Island text2.4746226.515943.5903Neighbours21BLASTN+IslandViewer 1804788.gbk
72399374242072521352Island text1.7541423.437534.5109Neighbours21BLASTNIslandViewer 2399374.gbk
83303264*332555822295Island text1.8514529.205246.5038Neighbours21BLASTN+3303264.gbk
93777907*379634818442Island text1.6610523.774932.9638Neighbours21BLASTN3777907.gbk
103855326*388218826863Island text1.8080926.050134.2162Neighbours21BLASTN+3855326.gbk
113886800*391072823929Island text1.8795223.440536.8315Neighbours21BLASTN3886800.gbk
124117459413677919321Island text1.6798324.095333.6445NeighboursBLASTN4117459.gbk
134244730*426728722558Island text1.6024825.065130.1143Neighbours21BLASTN4244730.gbk
144333643*435209918457Island text1.5214822.805235.3697Neighbours21BLASTN4333643.gbk
154405363*443759932237Island text1.6261424.523330.5534Neighbours21BLASTNIslandViewer 4405363.gbk
164496000*451836022361Island text1.4659225.522931.3071Neighbours21BLASTN4496000.gbk
174614442*463268618245Island text1.8133924.343434.9068Neighbours21BLASTN4614442.gbk
184645678466921723540Island text1.8259631.315248.9646Neighbours21BLASTN4645678.gbk
194767294*479042223129Island text1.6132123.93629.693Neighbours21BLASTN4767294.gbk
204824818484796723150Island text1.8618724.686239.3987Neighbours21BLASTN4824818.gbk
214899940492059520656Island text1.6432324.495434.059Neighbours21BLASTN+4899940.gbk
225027762*504643418673Island text1.4986224.276527.2567Neighbours21BLASTN+IslandViewer 5027762.gbk
235057825508539627572Island text1.6530624.047533.847Neighbours21BLASTN+5057825.gbk
245194000*525118457185Island text1.6280324.318733.8123Neighbours21BLASTN+5194000.gbk
255381208*540929928092Island text1.5912920.269933.8165Neighbours21BLASTN5381208.gbk