Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004552: Chlamydophila abortus S26/3, complete genome

NCBI: NC_004552

Host Lineage: Chlamydophila abortus; Chlamydophila; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Strain S26/3 was isolated from an enzootic (affecting animals in a specific geographical area) abortion case in sheep. Can cause abortion in ruminants. Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
123576925559119823Island text1.5008723.820544.9263Neighbours21BLASTN235769.gbk
226905329651427462Island text1.6524525.721446.142Neighbours21BLASTN+269053.gbk