Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004460: Vibrio vulnificus CMCP6 chromosome II, complete sequence

NCBI: NC_004460

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Pathogen in immunocompromised patients. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18168710173520049Island text1.5830128.286128.0058Neighbours21BLASTN81687.gbk
2708416*73859930184Island text1.691930.946737.5533Neighbours21BLASTN+IslandViewer 708416.gbk
397373899864424907Island text1.9133330.513823.3144Neighbours42BLASTN+IslandViewer 973738.gbk
41237129126309925971Island text1.5327233.712316.5063Neighbours42BLASTN+IslandViewer 1237129.gbk
51313468134104027573Island text2.3282333.341427.5143Neighbours42BLASTN+IslandViewer 1313468.gbk
61618892163876819877Island text1.6664829.717921.5166Neighbours42BLASTNIslandViewer 1618892.gbk
71718088173988521798Island text1.5376629.174429.4043Neighbours21BLASTN+1718088.gbk