Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004369: Corynebacterium efficiens YS-314, complete genome

NCBI: NC_004369

Host Lineage: Corynebacterium efficiens; Corynebacterium; Corynebacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This is the type strain of C. efficiens isolated by researchers of Ajinomoto food company from soils at Kanagawa, Japan in the late 1980's. The strain can grow and produce glutamate at temperatures above up to 45oC in contrast to C. glutamicum that is only efficient at around 30oC. This feature is very beneficial for industrial applications, because less heat removal is required in fermenters to be used for cultivation of these bacteria. Glutamate-producing bacterium. They may be found as members of the normal microflora of humans, where these bacteria find a suitable niche in virtually every anatomic site. This organism is a recently proposed new species of the genus capable of producing significant quantities of glutamic acid (glutamate), an important enhancer of taste in the food industry. It is currently used commercially to produce glutamate and other amino acids and compounds.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141236*6188820653Island text1.9762520.372132.2816Neighbours11BLASTN+IslandViewer 41236.gbk
225626228947133210Island text2.0605322.447822.5136Neighbours11BLASTN+IslandViewer 256262.gbk
337110940147530367Island text1.9117921.430715.5833Neighbours11BLASTN+IslandViewer 371109.gbk
443759445872021127Island text1.6620920.244826.8222Neighbours11BLASTN+437594.gbk
5531579*56209930521Island text2.318723.463124.376Neighbours11BLASTN+IslandViewer 531579.gbk
686889089511826229Island text1.823222.664921.399Neighbours11BLASTN+IslandViewer 868890.gbk
71051013*107385922847Island text1.7164921.947322.0063Neighbours11BLASTN+1051013.gbk
81268956131004941094Island text2.386525.235522.5906Neighbours11BLASTN+IslandViewer 1268956.gbk
91525787*154686021074Island text1.8036721.6536.9087Neighbours11BLASTN+IslandViewer 1525787.gbk
101552847157159918753Island text1.9447319.611322.3901Neighbours11BLASTN+IslandViewer 1552847.gbk
112203947222766523719Island text1.5039519.789628.2495Neighbours11BLASTN2203947.gbk
122465461248656121101Island text1.9493920.523631.5528Neighbours11BLASTN+IslandViewer 2465461.gbk
132968251*300684438594Island text2.467926.625735.9386Neighbours11BLASTN+IslandViewer 2968251.gbk
143027539*305195324415Island text1.4221526.501719.4847Neighbours11BLASTN+IslandViewer 3027539.gbk
153082691310589623206Island text1.9158819.418815.4789Neighbours11BLASTN+3082691.gbk