Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_004342: Leptospira interrogans serovar Lai str. 56601 chromosome I,

NCBI: NC_004342

Host Lineage: Leptospira interrogans; Leptospira; Leptospiraceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Pathogenic strain. Causative agent of leptospirosis. This organism is the causative agent of leptospirosis, a tropical zoonosis transmitted by direct contact with the urine of infected animals. This motile and obligately aerobic organism grows optimally at 28-30 C. Many serovars are adapted for specific mammalian reservoir hosts, which harbor the organisms in their renal tubules and shed them in their urine. Because of the large spectrum of animal species that serve as reservoirs, leptospirosis is considered to be the world's most widespread zoonotic disease.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
171734173891021570Island text2.0781827.839239.3193Neighbours21BLASTNIslandViewer 717341.gbk
2756942*77960722666Island text1.6988817.016725.6642Neighbours21BLASTN756942.gbk
3929033*95465825626Island text1.3553420.622631.7517Neighbours21BLASTN929033.gbk
41213202123685623655Island text1.4927416.682923.9493Neighbours21BLASTN+1213202.gbk
51648977166723918263Island text1.5329715.068718.1021Neighbours21BLASTN1648977.gbk
61744000176524521246Island text1.4793220.057131.0696Neighbours21BLASTNIslandViewer 1744000.gbk
73164500*318332418825Island text1.4985220.379418.97Neighbours341BLASTN+IslandViewer 3164500.gbk
83370310*339722626917Island text1.7170628.287424.0389Neighbours21BLASTNIslandViewer 3370310.gbk
93668371*369821929849Island text2.3580127.779742.9821Neighbours21BLASTN+IslandViewer 3668371.gbk