Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_004193: Oceanobacillus iheyensis HTE831, complete genome

NCBI: NC_004193

Host Lineage: Oceanobacillus iheyensis; Oceanobacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism is extremely salt tolerant and alkaliphilic and has a number of hydrogen, sodium and potassium transporters to deal with these extreme environments. This organism was isolated from deep sea mud (1050 m) from the Iheya ridge near Okinawa, Japan in 1998.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
135698*5458318886Island text1.8351820.545637.7878Neighbours21BLASTN35698.gbk
279588*11154731960Island text5.0127940.515351.8508Neighbours344BLASTN+79588.gbk
3119737*16514845412Island text1.8190424.867933.4778Neighbours21BLASTN+IslandViewer 119737.gbk
4205278*23213826861Island text3.3248928.045240.6006Neighbours21BLASTN+205278.gbk
5241480*26554624067Island text2.0281820.686433.6155Neighbours21BLASTN+241480.gbk
6375416*683449308034Island text3.4189327.699447.5515Neighbours21BLASTN+ PAI DB375416.gbk
770162272493123310Island text2.0074620.285139.1034Neighbours21BLASTN+701622.gbk
878395880200618049Island text1.81720.671232.1476Neighbours21BLASTN783958.gbk
9950000*96959919600Island text3.3336228.58444.3507Neighbours21BLASTN+950000.gbk
101335626*136155425929Island text1.6919820.133129.3824Neighbours21BLASTN+1335626.gbk
111558551157759919049Island text1.907720.874932.1416Neighbours21BLASTN1558551.gbk
122342528*236730224775Island text3.5046729.582843.5587Neighbours21BLASTN+2342528.gbk
132522000254434522346Island text1.5336321.382533.4267Neighbours21BLASTN2522000.gbk
142553630257458820959Island text2.1049421.171337.6802Neighbours21BLASTN2553630.gbk
152692136271369521560Island text1.7011921.143734.7292Neighbours21BLASTN+2692136.gbk
162921103294479123689Island text1.5192421.789933.9932Neighbours21BLASTN2921103.gbk
173078730309756518836Island text1.6781220.744229.489Neighbours21BLASTN+3078730.gbk
183215500*323352618027Island text2.0052220.531431.6847Neighbours21BLASTN3215500.gbk
193325612*334809922488Island text1.5058222.367532.507Neighbours21BLASTN+3325612.gbk
203434015345617122157Island text1.7922224.327439.6189Neighbours21BLASTNIslandViewer 3434015.gbk
213530000354888518886Island text2.217622.487521.8784Neighbours21+3530000.gbk
223578710359874720038Island text1.5845920.431133.4755Neighbours21BLASTN+3578710.gbk